fiji ☆

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Description:
Open-source image processing package

Type: Cask | Latest Version: 20260718-0417@0 | Tracked Since: Dec 17, 2025

Links: Homepage | formulae.brew.sh

Category: Multimedia

Tags: image-processing scientific biology analysis research

Install: brew install --cask fiji

About:
Fiji is a powerful, open-source image processing suite based on ImageJ, designed for scientific 3D and 2D image analysis. It bundles essential plugins and libraries, providing a comprehensive environment for biological image analysis. Its main value is offering a ready-to-use distribution for complex scientific workflows without manual configuration.

Key Features:

Pre-bundled with essential scientific image processing plugins
Supports 2D and 3D image analysis and visualization
Extensible via Java and scripting (Python, Groovy, etc.)
Cross-platform (Java-based) but distributed as a native macOS app here

Use Cases:

Biological and medical image analysis (e.g., cell counting, segmentation)
3D reconstruction from microscopy stacks
Automating repetitive image processing workflows

Alternatives:

ImageJ – The original, leaner toolkit; Fiji is ImageJ 'batteries-included' with many plugins pre-installed.
CellProfiler – Focuses on automated high-throughput analysis, whereas Fiji offers more manual and flexible processing.

Version History

Detected	Version	Change	Commit
Jul 18, 2026 10:11am	20260718-0417	VERSION_BUMP	5443bac6
Jul 18, 2026 4:40am	20260717-2317	VERSION_BUMP	ddefce61
Jul 17, 2026 4:45am	20260716-2317	VERSION_BUMP	3e2e571f
May 15, 2026 1:39am	20260514-1817	VERSION_BUMP	015fecb4
May 6, 2026 7:23pm	20260506-1117	VERSION_BUMP	69ddb3f5
Apr 23, 2026 10:20am	20260423-0417	VERSION_BUMP	4c9a31d7
Apr 22, 2026 1:22am	20260421-1817	VERSION_BUMP	74f6a71a
Mar 20, 2026 4:27am	20260319-2317	VERSION_BUMP	9068205c
Mar 18, 2026 7:01pm	20260318-1217	VERSION_BUMP	b5427f10
Mar 17, 2026 7:05pm	20260317-1217	VERSION_BUMP	26f9c7ac
Mar 13, 2026 9:56pm	20260313-1417	VERSION_BUMP	4e7b4fa2
Mar 7, 2026 9:50pm	20260307-1317	VERSION_BUMP	5ef1d85c
Mar 5, 2026 4:02pm	20260305-0817	VERSION_BUMP	29e2b10d
Mar 2, 2026 9:58pm	20260302-1417	VERSION_BUMP	a29eef1e
Feb 17, 2026 9:55pm	20260217-1417	VERSION_BUMP	55a79989
Feb 17, 2026 1:10am	20260216-1617	VERSION_BUMP	60ed47ea
Feb 4, 2026 4:27am	20260203-2217	VERSION_BUMP	a69f3eae
Jan 28, 2026 3:59pm	20260128-0817	VERSION_BUMP	78bd5518
Jan 20, 2026 6:58pm	20260120-1017	VERSION_BUMP	a25d924d
Jan 19, 2026 10:01pm	20260119-1317	VERSION_BUMP	8c999dd4
Jan 17, 2026 1:06am	20260116-1617	VERSION_BUMP	75241d11
Jan 16, 2026 2:13pm	20260114-1317	VERSION_BUMP	2d143492
Feb 17, 2024 10:37am	20240216-1617	VERSION_BUMP	2fa4e077
Feb 14, 2024 11:02am	20240213-2217	VERSION_BUMP	d5cbddc8
Jan 24, 2024 4:13pm	20240124-1317	VERSION_BUMP	91438391
Dec 11, 2023 1:28pm	20231211-1317	VERSION_BUMP	7903e070
Nov 7, 2023 11:49pm	20231107-1617	VERSION_BUMP	1fbacf13
Aug 2, 2023 10:19am	20230801-1717	VERSION_BUMP	406485b6
Dec 1, 2022 10:28pm	20221201-1017	VERSION_BUMP	d14fa7e8
Nov 19, 2022 10:59pm	20221118-2117	VERSION_BUMP	ec685611
Nov 16, 2022 6:02am	20221115-2117	VERSION_BUMP	1cd4cbd4
Nov 11, 2022 11:41pm	20221111-1317	VERSION_BUMP	a637814a
Nov 4, 2022 8:11pm	20221103-1117	VERSION_BUMP	dea0d6fb
Nov 2, 2022 9:46pm	20221102-1117	VERSION_BUMP	d880d42b
Oct 25, 2022 12:16pm	20221024-1417	VERSION_BUMP	6c2c9e57
Oct 13, 2022 11:17pm	20221013-0917	VERSION_BUMP	8dee8aa3
Oct 6, 2022 12:40am	20221005-1117	VERSION_BUMP	0c811e10
Oct 3, 2022 1:33pm	20220930-1717	VERSION_BUMP	f80e58dc
Oct 1, 2022 10:05am	20220930-1717	VERSION_BUMP	736e6b59
Sep 29, 2022 4:38am	20220927-1717	VERSION_BUMP	6285d5cd
Sep 27, 2022 10:34pm	20220923-1417	VERSION_BUMP	1e3750c0
Sep 23, 2022 2:51pm	20220922-1417	VERSION_BUMP	e07f47d5
Sep 22, 2022 7:15am	20220921-1717	VERSION_BUMP	746572f1
Sep 20, 2022 1:56am	20220919-1417	VERSION_BUMP	8605f598
Sep 15, 2022 9:58pm	20220914-2317	VERSION_BUMP	337b092f
Sep 15, 2022 1:39am	20220914-1417	VERSION_BUMP	5f434165