morpheus-app ☆

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Description:
Modelling environment for multi-cellular systems biology

Type: Cask | Latest Version: 2.2.5.2@0 | Tracked Since: Dec 28, 2025

Links: Homepage | formulae.brew.sh

Category: Other

Tags: systems-biology computational-biology modeling simulation cellular-automata research

Install: brew install --cask morpheus-app

About:
Morpheus is a modeling environment designed for simulating and analyzing multi-cellular systems biology. It provides an intuitive graphical interface for constructing complex models of cellular interactions, tissue dynamics, and morphogenesis. The tool's main value proposition is making sophisticated computational modeling accessible to experimental biologists without requiring advanced programming skills.

Key Features:

Graphical model editor with drag-and-drop components
Support for multiple modeling paradigms including cellular automata and agent-based models
Built-in analysis and visualization tools for simulation results
Cross-platform compatibility with reproducible simulation workflows

Use Cases:

Modeling tumor growth and cancer cell dynamics
Simulating tissue development and morphogenesis processes
Studying collective cell migration and wound healing
Analyzing host-pathogen interactions in multi-cellular systems

Alternatives:

CompuCell3D – Morpheus offers more intuitive GUI but CompuCell3D has more extensive community support
Virtual Cell – Virtual Cell focuses on PDE-based modeling while Morpheus specializes in discrete cell-based models

Version History

Detected	Version	Rev	Change	Commit
Aug 5, 2025 2:21pm	2.2.5.2	0	VERSION_BUMP	44535017