Description:
Snakemake code formatter
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Type: Formula
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Latest Version: 0.11.2@0
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Tracked Since: Oct 12, 2025
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Links:
Homepage |
formulae.brew.sh
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Category: Developer tools
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Tags:
snakemake
formatter
workflow
bioinformatics
linting
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Install:
brew install snakefmt
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About:
snakefmt is an opinionated code formatter for Snakemake files. It automatically reformats Snakemake code to a consistent style, making workflows easier to read and maintain. The tool helps teams enforce coding standards and reduces time spent on manual formatting debates.
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Key Features:
- Automatic formatting of Snakemake syntax
- Configurable style rules via pyproject.toml
- CLI tool for single files or entire directories
- Integration with pre-commit hooks
- Black-compatible formatting engine
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Use Cases:
- Enforcing consistent style across Snakemake workflow repositories
- Integrating formatting into CI/CD pipelines for bioinformatics pipelines
- Automatically formatting existing Snakemake files to a standard style
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Alternatives:
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Black
– General Python formatter that does not handle Snakemake-specific syntax
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manual formatting
– Time-consuming and inconsistent across teams
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