Description:
Pythonic workflow system
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Type: Formula
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Latest Version: 9.14.5@0
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Tracked Since: Nov 27, 2025
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Links:
Homepage |
@snakemake |
formulae.brew.sh
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Category: Developer tools
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Tags:
workflows
bioinformatics
data-pipeline
automation
python
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Install:
brew install snakemake
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About:
Snakemake is a workflow management system designed to create reproducible and scalable data analyses. It allows users to define workflows using a Python-based language, automatically managing dependencies and parallelizing tasks. Its standout feature is the ability to scale from single servers to cluster environments without changing workflow definitions.
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Key Features:
- Python-based syntax for easy integration with data science libraries
- Automatic dependency resolution and task parallelization
- Scalable from local execution to HPC clusters and cloud environments
- Built-in support for reproducibility and report generation
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Use Cases:
- Bioinformatics data processing pipelines
- Large-scale machine learning model training workflows
- Automated data analysis and visualization pipelines
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Alternatives:
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Nextflow
– Groovy-based, strong container support
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Apache Airflow
– Python-based, focused on scheduling and monitoring
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Luigi
– Python-based, simpler dependency management
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