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Related:
bioinformatics
genomics
alignment
cli
fasta
fastq
antimicrobial-resistance
biology
assembly
hpc
|
| Package |
Description |
Version |
|
abricate
☆
formula
|
Find antimicrobial resistance and virulence genes in contigs |
1.2.0 |
|
abyss
☆
formula
|
Genome sequence assembler for short reads |
2.3.10 |
|
fastga
☆
formula
|
Pairwise whole genome aligner |
1.3.1 |
|
geneious-prime
☆
cask
|
Bioinformatics software platform |
2026.1.3 |
|
gffread
☆
formula
|
GFF/GTF format conversions, region filtering, FASTA sequence extraction |
|
|
hmmer
☆
formula
|
Build profile HMMs and scan against sequence databases |
|
|
lastz
☆
formula
|
Pairwise aligner for DNA sequences |
|
|
mummer
☆
formula
|
Genome alignment tool |
|
|
seqan3
☆
formula
|
Modern C++ library for sequence analysis |
11 |
|
seqkit
☆
formula
|
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang |
2.12.0 |
|
seqtk
☆
formula
|
Toolkit for processing sequences in FASTA/Q formats |
|
|
vsearch
☆
formula
|
Versatile open-source tool for microbiome analysis |
2.30.2 |