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|
| Package |
Description |
Version |
|
accordance
☆
cask
|
Bible study software |
14.1.2 |
|
accordance@13
☆
cask
|
Bible study software |
13.3.5 |
|
alpscore
☆
formula
|
Applications and libraries for physics simulations |
2.3.2 |
|
antconc
☆
cask
|
Corpus analysis toolkit for concordancing and text analysis |
4.3.1 |
|
arcade-learning-environment
☆
formula
|
Platform for AI research |
00046ac3403768bfe45857610a3d333b8e35e026 |
|
badread
☆
formula
|
Long read simulator that can imitate many types of read problems |
0.4.1 |
|
bibutils
☆
formula
|
Bibliography conversion utilities |
7.2 |
|
boinc
☆
cask
|
Downloads scientific computing jobs and runs them invisibly in the background |
8.2.11 |
|
bookends
☆
cask
|
Reference management and bibliography software |
15.4.4 |
|
cahier
☆
cask
|
Knowledge base with native support for research |
0.10.2 |
|
cdsclient
☆
formula
|
Tools for querying CDS databases for astronomical data |
4.07 |
|
cellprofiler
☆
cask
|
Open-source application for biological image analysis |
4.2.8 |
|
chemdoodle
☆
cask
|
2D chemical drawing, publishing and informatics |
12.12.1 |
|
crystalmaker
☆
cask
|
Energy modelling for crystal & molecular structures |
11.7.2 |
|
datalad
☆
formula
|
Data distribution geared toward scientific datasets |
1.2.3 |
|
dcm2niix
☆
formula
|
DICOM to NIfTI converter |
1.0.20250506 |
|
devonagent
☆
cask
|
Assistant for efficient web searches |
3.11.11 |
|
devonsphere-express
☆
cask
|
Find items related to the frontmost document locally or online |
1.9.9 |
|
devonthink
☆
cask
|
Collect, organise, edit and annotate documents |
3.9.16 |
|
dynet
☆
formula
|
Dynamic Neural Network Toolkit |
2.1.2 |
|
ekphos
☆
formula
|
Terminal-based markdown research tool inspired by Obsidian |
|
|
elan
☆
cask
|
Annotation tool for audio and video recordings |
7.1 |
|
endnote
☆
cask
|
Reference manager |
22.3.0.22265,2025 |
|
enzymex
☆
cask
|
Visualise and edit DNA sequence files |
3.33 |
|
eprover
☆
formula
|
Theorem prover for full first-order logic with equality |
3.2 |
|
fiji
☆
cask
|
Open-source image processing package |
20260929-1417 |
|
folding-at-home
☆
cask
|
Graphical interface control for Folding |
8.5.6 |
|
folding-at-home@beta
☆
cask
|
Protein folding simulation for scientific research |
8.5.6 |
|
font-academicons
☆
cask
|
|
1.9.6 |
|
freesurfer
☆
cask
|
Software suite for processing and analyzing brain MRI images |
7.4.1 |
|
gama-platform
☆
cask
|
IDE for building spatially explicit agent-based simulations |
2025.09.0,17.09.25_860732f |
|
gambit
☆
formula
|
Software tools for game theory |
16.4.1 |
|
gams
☆
cask
|
General Algebraic Modeling System |
54.5.0 |
|
golly
☆
cask
|
Explore Conway's Game of Life and other types of cellular automata |
5.0 |
|
gpac
☆
formula
|
Multimedia framework for research and academic purposes |
|
|
gplates
☆
cask
|
Plate tectonics program |
2.5.0 |
|
gramps
☆
cask
|
Genealogy software |
6.0.8,1 |
|
historyhound
☆
cask
|
Browser history and bookmarks keyword search |
2.3.7 |
|
igv
☆
cask
|
Visual exploration of genomic data |
2.18.0 |
|
ipsw
☆
formula
|
Research tool for iOS & macOS devices |
3.1.647 |
|
isabelle
☆
cask
|
Generic proof assistant |
2025-2 |
|
itk-snap
☆
cask
|
Segment structures in 3D medical images |
4.4.0,20250909 |
|
jabref
☆
cask
|
Reference manager to edit, manage and search BibTeX files |
5.15 |
|
jasp
☆
cask
|
Statistical analysis application |
0.98.1.0 |
|
jbrowse
☆
cask
|
Genome browser |
4.3.0 |
|
knotes
☆
cask
|
Reading notes management tool |
2.11.2 |
|
libnetworkit
☆
formula
|
NetworKit is an OS-toolkit for large-scale network analysis |
|
|
libquantum
☆
formula
|
C library for the simulation of quantum mechanics |
|
|
logos
☆
cask
|
Bible study software |
53.1.0.0002 |
|
mega
☆
cask
|
Molecular evolution statistical analysis and construction of phylogenetic trees |
12.1.3 |