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Related:
bioinformatics
genomics
cli
bam
alignment
trimming
dna
ngs
visualization
c++
|
| Package |
Description |
Version |
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adapterremoval
☆
formula
|
Rapid adapter trimming, identification, and read merging |
2.3.4 |
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bamtools
☆
formula
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C++ API and command-line toolkit for BAM data |
2.5.3 |
|
bbtools
☆
formula
|
Brian Bushnell's tools for manipulating reads |
39.59 |
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bowtie2
☆
formula
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Fast and sensitive gapped read aligner |
2.5.4 |
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fastk
☆
formula
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K-mer counter for high-fidelity shotgun datasets |
1.1.0 |
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fastqc
☆
formula
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Quality control tool for high throughput sequence data |
0.12.1 |
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fgbio
☆
formula
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Tools for working with genomic and high throughput sequencing data |
|
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htslib
☆
formula
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C library for high-throughput sequencing data formats |
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igv
☆
cask
|
Visual exploration of genomic data |
2.18.0 |
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igv-desktop
☆
cask
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Visual exploration of genomic data |
2.19.8 |
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jellyfish
☆
formula
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Fast, memory-efficient counting of DNA k-mers |
|
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minimap2
☆
formula
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Versatile pairwise aligner for genomic and spliced nucleotide sequences |
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perbase
☆
formula
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Fast and correct perbase BAM/CRAM analysis |
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rasusa
☆
formula
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Randomly subsample sequencing reads or alignments |
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rna-star
☆
formula
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RNA-seq aligner |
2.7.11b |
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samtools
☆
formula
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Tools for manipulating next-generation sequencing data |
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sickle
☆
formula
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Windowed adaptive trimming for FASTQ files using quality |
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