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Related:
genomics
sequencing
cli
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sequence-analysis
evolution
dna-sequencing
molecular-biology
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|
| Package |
Description |
Version |
|
any2fasta
☆
formula
144
|
Convert various sequence formats to FASTA |
|
|
4peaks
☆
cask
|
Visualise and edit DNA sequence trace files |
1.8 |
|
abpoa
☆
formula
|
SIMD-based C library for fast partial order alignment using adaptive band |
1.5.5 |
|
abricate
☆
formula
|
Find antimicrobial resistance and virulence genes in contigs |
1.2.0 |
|
abyss
☆
formula
|
Genome sequence assembler for short reads |
2.3.10 |
|
adapterremoval
☆
formula
|
Rapid adapter trimming, identification, and read merging |
2.3.4 |
|
ape
☆
cask
|
Software for DNA sequence analysis and annotation |
3.1.10.1 |
|
augustus
☆
formula
|
Predict genes in eukaryotic genomic sequences |
3.5.0 |
|
autocycler
☆
formula
|
Tool for generating consensus long-read assemblies for bacterial genomes |
0.5.2 |
|
badread
☆
formula
|
Long read simulator that can imitate many types of read problems |
0.4.1 |
|
bamtools
☆
formula
|
C++ API and command-line toolkit for BAM data |
2.5.3 |
|
bandage
☆
cask
|
Bioinformatics app for navigating de novo assembly graphs |
0.9.0 |
|
bbtools
☆
formula
|
Brian Bushnell's tools for manipulating reads |
39.59 |
|
bcftools
☆
formula
|
Tools for BCF/VCF files and variant calling from samtools |
1.23 |
|
beagle
☆
formula
|
Evaluate the likelihood of sequence evolution on trees |
4.0.1 |
|
beast
☆
formula
|
Bayesian Evolutionary Analysis Sampling Trees |
10.5.0 |
|
beast2
☆
cask
|
Bayesian evolutionary analysis by sampling trees |
2.7.7 |
|
bedops
☆
formula
|
Set and statistical operations on genomic data of arbitrary scale |
2.4.42 |
|
bedtk
☆
formula
|
Simple toolset for BED files |
1.2 |
|
bedtools
☆
formula
|
Tools for genome arithmetic (set theory on the genome) |
2.31.1 |
|
bioawk
☆
formula
|
AWK modified for biological data |
1.0 |
|
biodiff
☆
formula
|
Hex diff viewer using alignment algorithms from biology |
1.2.1 |
|
bioperl
☆
formula
|
Perl tools for bioinformatics, genomics and life science |
1.7.8 |
|
blast
☆
formula
|
Basic Local Alignment Search Tool |
2.17.0 |
|
bowtie2
☆
formula
|
Fast and sensitive gapped read aligner |
2.5.4 |
|
breseq
☆
formula
|
Computational pipeline for finding mutations in short-read DNA resequencing data |
0.39.0 |
|
btllib
☆
formula
|
Bioinformatics Technology Lab common code library |
1.7.5 |
|
bwa
☆
formula
|
Burrow-Wheeler Aligner for pairwise alignment of DNA |
0.7.19 |
|
cellprofiler
☆
cask
|
Open-source application for biological image analysis |
4.2.8 |
|
cromwell
☆
formula
|
Workflow Execution Engine using Workflow Description Language |
91 |
|
diamond
☆
formula
|
Accelerated BLAST compatible local sequence aligner |
2.1.16 |
|
dxpy
☆
formula
|
DNAnexus toolkit utilities and platform API bindings for Python |
0.401.0 |
|
enzymex
☆
cask
|
Visualise and edit DNA sequence files |
3.33 |
|
fastga
☆
formula
|
Pairwise whole genome aligner |
1.3.1 |
|
fastk
☆
formula
|
K-mer counter for high-fidelity shotgun datasets |
1.1.0 |
|
fastme
☆
formula
|
Accurate and fast distance-based phylogeny inference program |
2.1.6.3 |
|
fastp
☆
formula
|
Ultra-fast all-in-one FASTQ preprocessor |
1.0.1 |
|
fastq-tools
☆
formula
|
Small utilities for working with fastq sequence files |
0.8.3 |
|
fastqc
☆
formula
|
Quality control tool for high throughput sequence data |
0.12.1 |
|
fgbio
☆
formula
|
Tools for working with genomic and high throughput sequencing data |
|
|
flye
☆
formula
|
De novo assembler for single molecule sequencing reads using repeat graphs |
|
|
foldit
☆
cask
|
Protein folding computer game |
52 |
|
freebayes
☆
formula
|
Bayesian haplotype-based genetic polymorphism discovery and genotyping |
|
|
gdat
☆
cask
|
App that utilises autosomal DNA to aid in the research of family trees |
2026r02,1rGnfTHdr7cuhSDDoN_oTqSYqqDzw3kkQ |
|
geneious-prime
☆
cask
|
Bioinformatics software platform |
2026.1.3 |
|
genometools
☆
formula
|
Versatile open source genome analysis software |
1.6.6 |
|
gffread
☆
formula
|
GFF/GTF format conversions, region filtering, FASTA sequence extraction |
|
|
gromacs
☆
formula
|
Versatile package for molecular dynamics calculations |
|
|
hmmer
☆
formula
|
Build profile HMMs and scan against sequence databases |
|
|
htslib
☆
formula
|
C library for high-throughput sequencing data formats |
|